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Update of the English version

New papers added, publication section of the appendix updated

Fred authored on10/06/2019 22:41:14
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 % Title: F. CHEVALIER - CV appendix.tex
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 % Author: Frédéric CHEVALIER
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 % Created in: 2015-12-16
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-% Modified in: 2018-01-15
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+% Modified in: 2018-07-05
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 % This is the complete listing of the communications
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 \newpage
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 \makeheading{Frédéric CHEVALIER \hfill Appendix}
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+%-------------------------------------
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+\section{Publications (full list)}
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+%-------------------------------------
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+%
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+\textit{Research articles}
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+%\begin{outerlistenum}
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+\begin{enumerate}
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+
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+	\item \textit{Whole genome amplification and exome sequencing of archived schistosome miracidia}. Winka Le Clec’h, \textbf{Frédéric D. Chevalier}, Marina McDew-White, Fiona Allan, Bonnie L. Webster, Anouk N. Gouvras, Safari Kinunghi, Louis-Albert Tchuem Tchuenté, Amadou Garba, Khalfan A. Mohammed, Shaali M. Ame, Joanne P. Webster, David Rollinson, Aidan M. Emery \& Timothy JC. Anderson. \href{https://doi.org/10.1017/S0031182018000811}{Parasitology 2018 1-9}.\\
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+
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+	\item \textit{\emph{TMTC2} variant associated with sensorineural hearing loss and auditory neuropathy spectrum disorder in a family dyad}. Hector Guillen-Ahlers, Christy B. Erbe, \textbf{Frédéric D. Chevalier}, Maria J. Montoya, Kip D. Zimmerman, Carl D. Langefeld, Michael Olivier \& Christina L. Runge. \href{http://dx.doi.org/10.1002/mgg3.397}{Molecular Genetics \& Genomics Medicine 2018 6(4):653-659}.\\
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+
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+	\item \textit{Independent origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population}. \textbf{Frédéric D. Chevalier}, Winka Le Clec'h, Nina Eng, Anastasia R. Rugel, Rafael Ramiro de Assis, Guilherme Oliveira, Stephen P. Holloway, Xiaohang Cao, P. John Hart, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1016/j.ijpara.2016.03.006}{International Journal for Parasitology 2016 46(7):417-424}.\\
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+
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+	\item \textit{Real-time PCR for sexing \emph{Schistosoma mansoni} cercariae}. \textbf{Frédéric D. Chevalier}, Winka Le Clec'h, Ana Carolina Alves de Mattos, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1016/j.molbiopara.2016.03.010}{Molecular and Biochemical Parasitology 2016 205(1-2):35-38}.\\
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+
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+	\item \textit{Characterization of hemolymph phenoloxidase activity in two \emph{Biomphalaria} snail species and impact of \emph{Schistosoma mansoni} infection}. Winka Le Clec'h, Timothy JC. Anderson \& \textbf{Frédéric D. Chevalier}. \href{http://dx.doi.org/10.1186/s13071-016-1319-6}{Parasites \& Vectors 2016 9:32}.\\
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+
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+	\item \textit{The hematopoietic organ: a cornerstone for \emph{Wolbachia} propagation between and within hosts}. Christine Braquart-Varnier, Maryline Raimond, Gaëtan Mappa, \textbf{Frédéric D. Chevalier}, Winka Le Clec'h \& Mathieu Sicard. \href{http://dx.doi.org/10.3389/fmicb.2015.01424}{Frontiers in Microbiology 2015 6:1424}.\\
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+
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+	\item \textit{The mutualistic side of \emph{Wolbachia}-isopod interactions: \emph{Wolbachia} mediated protection against pathogenic intracellular bacteria}. Christine Braquart-Varnier, Mine Altinli, Romain Pigeault, \textbf{Frédéric D. Chevalier}, Pierre Grève, Didier Bouchon \& Mathieu Sicard. \href{http://dx.doi.org/10.3389/fmicb.2015.01388}{Frontiers in Microbiology 2015 6:1388}.\\
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+
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+	\item \textit{Efficient linkage mapping using exome capture and extreme QTL in schistosome parasites}.  \textbf{Frédéric D. Chevalier}, Claudia LL. Valentim, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1186/1471-2164-15-617}{BMC Genomics 2014 15:617}.\\
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+
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+	\item \textit{Genetic and molecular basis of drug resistance and species-specific drug action in Schistosome parasites}. Claudia LL. Valentim, Donato  Cioli, \textbf{Frédéric D. Chevalier}, Xiaohang Cao, Alexander B. Taylor, Stephen P. Holloway, Livia Pica-Mattoccia, Alessandra Guidi, Annalisa Basso, Isheng J. Tsai, Matthew Berriman, Claudia Carvalho-Queiroz, Marcio Almeida, Hector Aguilar, Doug E. Frantz, P. John Hart, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1126/science.1243106}{Science 2013 342(6164):1385-9}.\\
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+
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+	\item \textit{Cannibalism and predation as paths for horizontal passage of \emph{Wolbachia} between terrestrial isopods}. Winka Le Clec'h, \textbf{Frédéric D. Chevalier}, Lise Genty, Joanne Bertaux, Didier Bouchon \& Mathieu Sicard. \href{http://dx.doi.org/10.1371/journal.pone.0060232}{PLoS ONE 2013 8(4):e60232}.\\
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+
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+	\item \textit{Feminizing \emph{Wolbachia}: A transcriptomics approach with insights on the immune response genes in \emph{Armadillidium vulgare}}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gaboreau, Delphine Charif, Guillaume Mitta, Frédéric Gavory, Patrick Wincker, Pierre Grève, Christine Braquart-Varnier \& Didier Bouchon. \href{http://dx.doi.org/10.1186/1471-2180-12-S1-S1}{BMC Microbiology 2012 12:suppl S1}.\\
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+
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+	\item \textit{The immune cellular effectors of terrestrial isopod \emph{Armadillidium vulgare}: Meeting with their invaders,  \emph{Wolbachia}}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gaboreau, Joanne Bertaux, Maryline Raimond, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://dx.doi.org/10.1371/journal.pone.0018531}{PLoS ONE 2011 6(4):e18531}.\\
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+	\item \textit{Variations of immune parameters in terrestrial isopods: a matter of Gender, Aging and \emph{Wolbachia}}. Mathieu Sicard, \textbf{Frédéric Chevalier}, Mickaël  De Vlechouver, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://dx.doi.org/10.1007/s00114-010-0699-2}{Naturwissenschaften 2010 97(9):819-826}.\\
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+	\item \textit{Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus \emph{Oryza}}. Jetty SS.  Ammiraju, Andrea  Zuccolo, Yeisoo  Yu, Xiang  Song, Benoit  Piegu, \textbf{Frédéric  Chevalier}, Jason G.  Walling, Jianxin  Ma, Jayson  Talag, Darshan S.  Brar, Phillip J.  SanMiguel, Ning  Jiang, Scott A.  Jackson, Olivier  Panaud \& Rod A. Wing. \href{http://dx.doi.org/10.1111/j.1365-313X.2007.03242.x}{The Plant Journal 2007 52(2):342-345}.
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+
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+%\end{outerlistenum}
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+\end{enumerate}
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+
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+\blankline
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+
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+\textit{Reviews}
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+\begin{enumerate}
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+
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+    \item \textit{Genetic crosses and linkage mapping in schistosome parasites}. Timothy JC. Anderson, Philip T. LoVerde, Winka Le Clec’h \& \textbf{Frédéric D. Chevalier}. Trends in Parasitology (accepted) %\href{https://doi.org/10.1017/S0031182018000811}{Parasitology 2018 1-9}.\\
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+
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+\end{enumerate}
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+
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+\blankline
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+
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+\textit{Conference proceedings}
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+
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+\begin{enumerate}
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+
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+	\item \textit{\emph{Armadillidium vulgare} – \emph{Wolbachia} association: Impacts on host immune system and immunocompetence}. \textbf{Frédéric Chevalier}, Mathieu Sicard, Joanne Bertaux, Juline Herbinière, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://www.istib-2011.si/uploads/media/ISTIB_2011_Proceedings.pdf}{Proceedings of the 8$^{th}$ International Symposium of Terrestrial Isopod Biology 2011}.\\
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+	\item \textit{The first reference transcriptome in isopods}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gabo$\-$reau, Delphine Charif, Guillaume Mitta, Frédéric Gavory, Patrick Wincker, Pierre Grève, Christine Braquart-Varnier, Didier Bouchon. \href{http://www.istib-2011.si/uploads/media/ISTIB_2011_Proceedings.pdf}{Proceedings of the 8$^{th}$ International Symposium of Terrestrial Isopod Biology 2011}.\\
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+
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+\end{enumerate}
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+
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+\blankline
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+
11 73
 %--------------------------------------------
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-\section{Oral communications (complete list)}
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+\section{Oral communications (full list)}
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 %--------------------------------------------
14 76
 %
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 \footnotetext[1]{presenting author}
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-\begin{outerlist}
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+\begin{enumerate}
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+
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+	\item {93$^{rd}$ Annual Meeting of the American Society of Parasitologists}: \textit{Using an iterative process in the development of novel therapeutics to treat human schistosomiasis.} Meghan A. Guzman\footnotemark[1], Reid S. Tarpley, Anastasia Rugel, Alexander B. Taylor, Diana L. Zamora, \textbf{Frederic Chevalier}, Stanton McHardy, John Hart, Timothy J. Anderson \& Philip T. LoVerde. Cancun, Mexico, June 21$^{st}$ to 24$^{th}$ 2018.
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+	
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+	\item {2$^{nd}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{The blood microbiome of Biomphalaria snails: the missing link in snail-schistosome interactions?} \textbf{Frédéric D. Chevalier}\footnotemark[1], Marina McDew-White, Robbie Diaz, Timothy JC. Anderson \& Winka M. Le Clec’h. Washington, DC, USA, May 22$^{nd}$ to 23$^{rd}$ 2018.
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+	
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+	\item {2$^{nd}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{The genetic basis of praziquantel resistance in laboratory selected \emph{Schistosoma mansoni}.} Winka M. Le Clec’h\footnotemark[1], \textbf{Frédéric D. Chevalier}, Marina McDew-White, Robbie Diaz, Ana Alves de Mattos, Meghan A. Guzman, Philip T. LoVerde \& Timothy JC. Anderson. Washington, DC, USA, May 22$^{nd}$ to 23$^{rd}$ 2018.
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 	\item {Society of Molecular Biology and Evolution 2017}: \textit{Parasite invasions: colonization and adaption of schistosomes to the New World during the slave trade.} \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde, Rafael Ramiro de Assis, Guillerme Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Timothy JC. Anderson. Austin, TX, USA, July 2$^{nd}$ to 6$^{th}$ 2017.
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 	\item Immuninv: \textit{\emph{Wolbachia} effects on immune cellular effectors of \emph{Armadillidium vulgare} (crustacean, terrestrial isopod)}. \textbf{Frédéric Chevalier}\footnotemark[1], Juline Herbinière, Mathieu Sicard, Maryline Raimond, Franck Morel, Pierre Grève \& Christine Braquart-Varnier. Montpellier, France, May 23$^{rd}$ to 25$^{th}$ 2008.
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-\end{outerlist}
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+\end{enumerate}
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 \blankline
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 %----------------------------------------------
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-\section{Poster communications (complete list)}
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+\section{Poster communications (full list)}
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 %----------------------------------------------
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 %
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 \footnotetext[1]{presenting author}
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-\begin{outerlist}
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+\begin{enumerate}
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+	\item {2$^{nd}$ Symposium for International Research and Innovation in Schistosomiasis}:: \textit{Hybridization and introgression within the \emph{Schistosoma haematobium} species group inferred from exome sequencing.} Roy N. Platt II\footnotemark[1], Winka Le Clec’h, Marina McDew-White, \textbf{Frédéric D. Chevalier}, Fiona Allan, Bonnie L. Webster, Amadou Garba, Khalfan A. Mohammed, Shaali M. Ame, Joanne P. Webster, David Rollinson, Aidan M. Emery \& Timothy JC. Anderson. Washington, DC, USA, May 22$^{nd}$ to 23$^{rd}$ 2018.
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+	
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 	\item {Society of Molecular Biology and Evolution 2017}: \textit{Improving the \emph{Schistosoma mansoni} genome assembly using genetic crosses and linkage analysis.} \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka Le Clec’h, Gabriel Mouahid, Hélène Moné, Mohamed A. Idris, Salem Al Yafae, Juliette Langand, Nancy Holroyd, Alan Tracey, Matthew Berriman \& Tim JC. Anderson. Austin, TX, USA, July 2$^{nd}$ to 6$^{th}$ 2017.
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 	\item {Society of Molecular Biology and Evolution 2017}: \textit{Robust exome sequencing of single schistosome miracidia optimizing SNP calling and accuracy assessment}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka Le Clec'h, \& Tim JC. Anderson. Austin, TX, USA, July 2$^{nd}$ to 6$^{th}$ 2017.
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 	\item \href{http://www.cnrs.fr/insb/cjm/archives/2009/docs/Theopold_Ferrandon_2009_web.pdf}{Jacques Monod Conferences}: \textit{\emph{Wolbachia} symbiosis: Impacts on terrestrial isopod immune system}. \textbf{Frédéric Chevalier}, Juline Herbinière, Mathieu Sicard, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier\footnotemark[1]. Aussois, France, May 23$^{rd}$ to 27$^{th}$ 2009.
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-\end{outerlist}
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\ No newline at end of file
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+\end{enumerate}
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1 1
 %Original author: Theodore P.~Pavlic
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 %Author: Frédéric CHEVALIER
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 %Created in: 2009-11-29
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-%Modified in: 2018-01-15
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 %source: http://links.tedpavlic.com/tex/tpavlic_cv.tex
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         {\begin{itemize}[#1]}{\end{itemize}%
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         \vspace{-.6\baselineskip}}
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 \newenvironment{innerlist3}[1][\enskip $\succ$]%
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         {\begin{compactitem}[#1]}{\end{compactitem}}
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+% Help having the horizontal space filled properly in some case
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+% source:https://tex.stackexchange.com/a/112321
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+\newcommand{\lalign}[2]{\makebox[\widthof{#2}][l]{#1}}
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 % if there is a needed pagebreak nearby.
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@@ -251,7 +262,7 @@ Marital status: single
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 \begin{tabular}[t]{@{}p{\textwidth-\rcollength}p{\rcollength}}
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 \href{http://txbiomed.org/}%
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      {Texas Biomedical Research Institute} 	& \textit{Voice:} +1 210 258 9277 \\
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-P.O. Box 760549								& \textit{E-mail:} \href{mailto:fcheval@txbiomed.org} {fcheval@txbiomed.org} \\
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+P.O. Box 760549								& \textit{e-mail:} \href{mailto:fcheval@txbiomed.org} {fcheval@txbiomed.org} \\
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 San Antonio     							& \textit{www:} \href{http://txbiomed.org/}{txbiomed.org} \\
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 Texas 78245-0549 -- USA    					& \textit{ORCID:} \href{http://orcid.org/0000-0003-2611-8106}{0000-0003-2611-8106} \\
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 \end{tabular}
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@@ -276,10 +287,11 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
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 \item[] \href{http://txbiomed.org}{\textbf{Texas Biomedical Research Institute}}, San Antonio, Texas, USA
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         \begin{innerlist}
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         \item Group leader: \href{mailto:tanderso@txboimedical.org}{Dr. Tim ANDERSON}
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-        \item Project:
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+        \item Projects:
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         	\begin{innerlist2}
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 	        \item Host specificity in the \emph{Schistosoma mansoni} / \emph{Biomphalaria} model: genes involved in schistosome compatibility phenotypes
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 	        \item Drug resistance (oxamniquine, praziquantel)
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+            \item Schistosome population exomics
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 	        \item Microbiome of snail hemolymph
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 	        \item Snail immunity factor (laccase activity)
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            	\end{innerlist2}
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@@ -337,15 +349,15 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
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 %-----------------------
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-\section{Funding awards}
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 %-----------------------
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 %
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-\textbf{\href{http://www.txbiomed.org/forum/about-the-forum}{Forum Awards}}
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+\textbf{\href{https://forum.txbiomed.org/}{Texas Biomed Forum grants}}
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 \begin{outerlist}
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 	\item Project: Genetic manipulation of schistosome parasites
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 	\begin{innerlist2}
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 		%\item Year: 2015
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-		\item Grant number: 15-04566
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+    \item Grant number: 15-04566
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 		\item Role: Co-I
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 	\end{innerlist2}
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 	\item Project: The microbiome of the schistosome snail host
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 	\begin{innerlist2}
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 		%\item Year: 2014
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-		\item Grant number: 14-04491
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 		\item Role: Co-PI
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 	\end{innerlist2}
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 	\item Project: Genomic analysis of schistosome hybridization
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 	\begin{innerlist2}
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 		%\item Year: 2014
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-		\item Grant number: 14-04488
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 		\item Role: Co-I
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 	\end{innerlist2}
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 \end{outerlist}
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@@ -452,7 +464,7 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
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 				\item Laboratory: Genome and Development of Plants, UMR CNRS 5096, University of Perpignan, France
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 				\end{innerlist2}
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 			\blankline
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-			\item First internship: The compatibility in \emph{Biomphalaria glabrata}/\emph{Echinostoma caproni} model: Suppression subtractive hybridization library and tissular expression of candidate genes	\hfill \textbf{January 2006 to June 2006}
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+			\item First internship: The compatibility in \emph{Biomphalaria glabrata}/\emph{Echinostoma caproni} model: Suppression subtractive hybridization library and tissular expression of candidate genes \hfill \textbf{\ralign{January 2006 to June 2006}}
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 				\begin{innerlist2}
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 				\item Supervisor: \href{mailto:mitta@univ-perp.fr}{Pr. Guillaume MITTA}
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 				\item Laboratory: Functional and Evolutionary Parasitology, UMR CNRS 5555, University of Perpignan, France
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 %
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 \textit{Bachelor students}
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 \begin{outerlist}
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+	\item Nina ENG: Oxamniquine resistance alleles in a Brazilian	\hfill \textbf{May to August 2014} %\\ \null	\hfill	\mbox{\textbf{May to August 2014}}
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+schistosome population
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 	\item Romain PIGEAULT: Characterization of hemocyte functions	\hfill \textbf{May to June 2010}
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-	\item Nina ENG: Oxamniquine resistance alleles in a Brazilian schistosome population	\\ \null	\hfill \textbf{May to August 2014} %\\ \null	\hfill	\mbox{\textbf{May to August 2014}}
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 \end{outerlist}
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 \blankline
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 \section{Publications}
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 %---------------------
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 %
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-\textit{Peer-reviewed articles}
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+\textit{Selected research articles (full list in appendix)}
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 \begin{outerlist}
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 	%\item \textit{Endosymbiosis in Arthropods: evidence for a symbiotic syndrome?}. Yves Moné, Marie-Christine Carpentier, Natacha Kremer, Vincent Raquin, Claire Valiente Moro, Carole Vincent-Monégat, \textbf{Frédéric D. Chevalier}, Christine Braquart-Varnier, Pierre Grève, Patrick Mavingui, Heddi Abdelaziz1, Didier Bouchon \& Fabrice Vavre. \href{http://dx.doi.org/xx}{xx xx xx(xx):xx-x}.\\
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+	\item \textit{Whole genome amplification and exome sequencing of archived schistosome miracidia}. Winka Le Clec’h, \textbf{Frédéric D. Chevalier}, Marina McDew-White, Fiona Allan, Bonnie L. Webster, Anouk N. Gouvras, Safari Kinunghi, Louis-Albert Tchuem Tchuenté, Amadou Garba, Khalfan A. Mohammed, Shaali M. Ame, Joanne P. Webster, David Rollinson, Aidan M. Emery \& Timothy JC. Anderson. \href{https://doi.org/10.1017/S0031182018000811}{Parasitology 2018 1-9}.\\
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 	\item \textit{Independent origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population}. \textbf{Frédéric D. Chevalier}, Winka Le Clec'h, Nina Eng, Anastasia R. Rugel, Rafael Ramiro de Assis, Guilherme Oliveira, Stephen P. Holloway, Xiaohang Cao, P. John Hart, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1016/j.ijpara.2016.03.006}{International Journal for Parasitology 2016 46(7):417-424}.\\
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-	\item \textit{Real-time PCR for sexing \emph{Schistosoma mansoni} cercariae}. \textbf{Frédéric D. Chevalier}, Winka Le Clec'h,  Ana Carolina Alves de Mattos, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1016/j.molbiopara.2016.03.010}{Molecular and Biochemical Parasitology 2016 205(1-2):35-38}.\\
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+	\item \textit{Real-time PCR for sexing \emph{Schistosoma mansoni} cercariae}. \textbf{Frédéric D. Chevalier}, Winka Le Clec'h, Ana Carolina Alves de Mattos, Philip T. LoVerde \& Timothy JC. Anderson. \href{http://dx.doi.org/10.1016/j.molbiopara.2016.03.010}{Molecular and Biochemical Parasitology 2016 205(1-2):35-38}.\\
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 	\item \textit{Characterization of hemolymph phenoloxidase activity in two \emph{Biomphalaria} snail species and impact of \emph{Schistosoma mansoni} infection}. Winka Le Clec'h, Timothy JC. Anderson \& \textbf{Frédéric D. Chevalier}. \href{http://dx.doi.org/10.1186/s13071-016-1319-6}{Parasites \& Vectors 2016 9:32}.\\
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 	\item \textit{Feminizing \emph{Wolbachia}: A transcriptomics approach with insights on the immune response genes in \emph{Armadillidium vulgare}}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gaboreau, Delphine Charif, Guillaume Mitta, Frédéric Gavory, Patrick Wincker, Pierre Grève, Christine Braquart-Varnier \& Didier Bouchon. \href{http://dx.doi.org/10.1186/1471-2180-12-S1-S1}{BMC Microbiology 2012 12:suppl S1}.\\
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-	\item \textit{The immune cellular effectors of terrestrial isopod \emph{Armadillidium vulgare}: Meeting with their invaders,  \emph{Wolbachia}}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gaboreau, Joanne Bertaux, Maryline Raimond, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://dx.doi.org/10.1371/journal.pone.0018531}{PLoS ONE 2011 6(4):e18531}.\\
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-
524 537
 	\item \textit{Variations of immune parameters in terrestrial isopods: a matter of Gender, Aging and \emph{Wolbachia}}. Mathieu Sicard, \textbf{Frédéric Chevalier}, Mickaël  De Vlechouver, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://dx.doi.org/10.1007/s00114-010-0699-2}{Naturwissenschaften 2010 97(9):819-826}.\\
525 538
 
526
-	\item \textit{Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus \emph{Oryza}}. Jetty SS.  Ammiraju, Andrea  Zuccolo, Yeisoo  Yu, Xiang  Song, Benoit  Piegu, \textbf{Frédéric  Chevalier}, Jason G.  Walling, Jianxin  Ma, Jayson  Talag, Darshan S.  Brar, Phillip J.  SanMiguel, Ning  Jiang, Scott A.  Jackson, Olivier  Panaud \& Rod A. Wing. \href{http://dx.doi.org/10.1111/j.1365-313X.2007.03242.x}{The Plant Journal 2007 52(2):342-5}.
527
-
528 539
 \end{outerlist}
529 540
 
530 541
 \blankline
531 542
 
532
-\textit{Conference proceedings}
533
-
543
+\textit{Reviews}
534 544
 \begin{outerlist}
535 545
 
536
-	\item \textit{\emph{Armadillidium vulgare} – \emph{Wolbachia} association: Impacts on host immune system and immunocompetence}. \textbf{Frédéric Chevalier}, Mathieu Sicard, Joanne Bertaux, Juline Herbinière, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. \href{http://www.istib-2011.si/uploads/media/ISTIB_2011_Proceedings.pdf}{Proceedings of the 8$^{th}$ International Symposium of Terrestrial Isopod Biology 2011}.\\
537
-
538
-	\item \textit{The first reference transcriptome in isopods}. \textbf{Frédéric Chevalier}, Juline Herbinière-Gabo$\-$reau, Delphine Charif, Guillaume Mitta, Frédéric Gavory, Patrick Wincker, Pierre Grève, Christine Braquart-Varnier, Didier Bouchon. \href{http://www.istib-2011.si/uploads/media/ISTIB_2011_Proceedings.pdf}{Proceedings of the 8$^{th}$ International Symposium of Terrestrial Isopod Biology 2011}.\\
546
+    \item \textit{Genetic crosses and linkage mapping in schistosome parasites}. Timothy JC. Anderson, Philip T. LoVerde, Winka Le Clec’h \& \textbf{Frédéric D. Chevalier}. Trends in Parasitology (submitted) %\href{https://doi.org/10.1017/S0031182018000811}{Parasitology 2018 1-9}.\\
539 547
 
540 548
 \end{outerlist}
541 549
 
... ...
@@ -545,39 +553,31 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
545 553
 \section{Conference communications}
546 554
 %----------------------------------
547 555
 %
548
-\textit{Oral communications} (\footnotemark[1]presenting author)
556
+\textit{Oral communications} (\footnotemark[1]presenting author, full list in appendix)
549 557
 \begin{outerlist}
550 558
 
551
-	\item {Society of Molecular Biology and Evolution 2017}: \textit{WParasite invasions: colonization and adaption of schistosomes to the New World during the slave trade.} \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde, Rafael Ramiro de Assis, Guillerme Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Timothy JC. Anderson. Austin, TX, USA, July 2$^{nd}$ to 6$^{th}$ 2017.
559
+	\item {2$^{nd}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{The blood microbiome of Biomphalaria snails: the missing link in snail-schistosome interactions?} \textbf{Frédéric D. Chevalier}\footnotemark[1], Marina McDew-White, Robbie Diaz, Timothy JC. Anderson \& Winka M. Le Clec’h. Washington, DC, USA, May 22$^{nd}$ to 23$^{rd}$ 2018.
552 560
 
553
-	\item \href{http://www.molecular-helminthology-conference.com/}{Molecular Helminthology 2017: An Integrated Approach}: \textit{A major locus on chr. 1 determines cercarial shedding time in Omani schistosomes}. Gabriel Mouahid, \textbf{Frédéric D. Chevalier}, Juliette Langand, Mohamed A. Idris, Salem Al Yafae, Marina McDew-White, Timothy JC. Anderson\footnotemark[1], Hélène Moné. Cape Cod, MA, USA, March 19$^{th}$ to 22$^{th}$ 2017.
561
+	\item {Society of Molecular Biology and Evolution 2017}: \textit{Parasite invasions: colonization and adaption of schistosomes to the New World during the slave trade.} \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde, Rafael Ramiro de Assis, Guillerme Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Timothy JC. Anderson. Austin, TX, USA, July 2$^{nd}$ to 6$^{th}$ 2017.
554 562
 
555
-	\item \href{https://www.eventbrite.co.uk/e/4th-young-investigators-symposium-tickets-21298627769?utm_term=eventurl_text#}{4$^{th}$ Young Investigators Symposium}: \textit{Mendel meets schistosomes! The genetic bases of adaptive parasite traits}. \textbf{Frédéric D. Chevalier}, Winka Le Clec’h, Marina McDew-White, Philip LoVerde \& Tim JC. Anderson\footnotemark[1]. Glasgow, UK, August 25$^{th}$ 2016.
563
+	\item \href{http://www.molecular-helminthology-conference.com/}{Molecular Helminthology 2017: An Integrated Approach}: \textit{A major locus on chr. 1 determines cercarial shedding time in Omani schistosomes}. Gabriel Mouahid, \textbf{Frédéric D. Chevalier}, Juliette Langand, Mohamed A. Idris, Salem Al Yafae, Marina McDew-White, Timothy JC. Anderson\footnotemark[1], Hélène Moné. Cape Cod, MA, USA, March 19$^{th}$ to 22$^{th}$ 2017.
556 564
 
557 565
 	\item \href{http://www.meegidconference.com/}{13$^{th}$ International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases}: \textit{Schistosomiasis: From devastating parasitic disease to tractable model system}. \textbf{Frédéric D. Chevalier}, Winka Le Clec’h, Marina McDew-White, Philip LoVerde \& Tim JC. Anderson\footnotemark[1]. Antwerp, Belgium, May 10$^{th}$ to 13$^{th}$ 2016.
558 566
 
559
-	\item \href{http://www.afbr-bri.com/schistosomiasis/siris-2/}{1$^{st}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{Genetic mapping of host specificity in  \emph{Schistosoma mansoni}}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde \& Timothy J. Anderson. Washington, DC, USA, February 3$^{rd}$ to 4$^{th}$ 2016.
567
+	\item \href{http://www.afbr-bri.com/schistosomiasis/siris-2/}{1$^{st}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{Genetic mapping of host specificity in \emph{Schistosoma mansoni}}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde \& Timothy J. Anderson. Washington, DC, USA, February 3$^{rd}$ to 4$^{th}$ 2016.
560 568
 
561 569
 	\item \href{http://www.afbr-bri.com/schistosomiasis/siris-2/}{1$^{st}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{Genetic analysis of transmission-related traits in \emph{Schistosoma mansoni}}. Winka M. Le Clec’h\footnotemark[1], \textbf{Frédéric D. Chevalier} \& Timothy J. Anderson. Washington, DC, USA, February 3$^{rd}$ to 4$^{th}$ 2016.
562 570
 
563
-	\item \href{http://www.afbr-bri.com/schistosomiasis/siris-2/}{1$^{st}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{Population “exomics” of \emph{Schistosoma mansoni}}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde, Rafael Ramiro de Assis, Guillerme Corrêa-Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Timothy JC. Anderson. Washington, DC, USA, February 3$^{rd}$ to 4$^{th}$ 2016.
564
-
565
-	\item \href{http://www.afbr-bri.com/schistosomiasis/siris-2/}{1$^{st}$ Symposium for International Research and Innovation in Schistosomiasis}: \textit{\emph{Schistosoma mansoni}: Genetic basis of drug resistance, drug mode of action and drug design}. Stacey R. Stahl, , Alexander B. Taylor, Xiaohang Cao, P. John Hart, Stanton F. McHardy, Ambrosio Lopez, \textbf{Frédéric D. Chevalier}, Timothy J.C. Anderson \& Philip T. LoVerde\footnotemark[1]. Washington, DC, USA, February 3$^{rd}$ to 4$^{th}$ 2016.
566
-
567 571
 	\item \href{http://www.astmh.org/Meeting_Archives.htm}{64$^{th}$ American Society of Tropical Medicine and Hygiene Annual Meeting}: \textit{"Extreme" QTL methods for genetic mapping of drug resistance and host specificity in Schistosome parasites}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka Le Clec’h, Philip LoVerde \& Tim J. Anderson. Philadelphia, PA, USA, October 25$^{th}$ to 29$^{th}$ 2015.
568 572
 
569 573
 	\item \href{http://sites.univ-provence.fr/evol-cgr/index.php?option=com_content&view=article&id=54&Itemid=42}{19$^{th}$ Evolutionnary Biology Meeting}: \textit{Schistosome population genomics using single archived parasite larvae}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Winka M. Le Clec’h, Philip T. LoVerde, Rafael Ramiro de Assis, Guillerme Corrêa-Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Timothy JC. Anderson. Marseilles, France, September 15$^{nd}$ to 18$^{th}$ 2015.
570 574
 
571
-	\item \href{http://icopa2014.org/}{13$^{th}$ International Congress of Parasitology}: \textit{Schistosome exome sequencing}. \textbf{Frédéric Chevalier}, Winka Le Clec’h, Philip LoVerde, Rafael Ramiro de Assis, Guillerme Corrêa-Oliveira, Safari Kinunghi, Anouk Gouvras, Bonnie Webster, Joanne Webster, Aidan Emery, David Rollinson \& Tim Anderson\footnotemark[1]. Mexico, Mexico, August 10$^{th}$ to 15$^{th}$ 2014.
572
-
573 575
 	\item \href{https://www.eseb2013.com/}{XIV Congress of the European Society for Evolutionary Biology}: \textit{Functional analysis of differentially expressed genes in the symbiotic association between the pill-bug \emph{Armadillidium vulgare} and the feminising \emph{Wolbachia}}. Didier Bouchon\footnotemark[1], Yves Moné, Marie-Christine Carpentier, Fabrice Vavre, Christine Braquart-Varnier, Pierre Grève \& \textbf{Frédéric Chevalier}. Lisbon, Portugal, August 19$^{th}$ to 24$^{th}$ 2013.
574 576
 
575 577
 	\item \href{http://wolbachia2012.conference.univ-poitiers.fr/?lang=en}{7$^{th}$ International \emph{Wolbachia} Conference}: \textit{Evolution and control of host-microbe symbiosis in arthropods: an RNAseq-based transcriptomics analysis}. Yves Moné\footnotemark[1], \textbf{Frédéric Chevalier}, Marie-Claire Carpentier, Natacha Kremer, Patrick Mavingui, Vincent Raquin, Aziz Heddi, Carole Vincent-Monéguat, Christine Braquart-Varnier, Pierre Grève, Didier Bouchon \& Farbice Vavre. Île d'Oléron, France, June 7$^{th}$ to 14$^{th}$ 2012.
576 578
 
577 579
 	\item 8$^{th}$ International Symposium of Terrestrial Isopod Biology: \textit{\emph{Armadillidium vulgare} – \emph{Wolbachia} association: Impacts on host immune system and immunocompetence}. \textbf{Frédéric Chevalier}\footnotemark[1], Mathieu Sicard, Joanne Bertaux, Juline Herbinière, Franck Morel, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. Bled, Slovenia, June 19$^{th}$ to 23$^{rd}$ 2011. \textbf{Price : Third best presentation.}
578 580
 
579
-	\item 6$^{th}$ International \emph{Wolbachia} Conference: \textit{Impact of \emph{Wolbachia} symbiosis on immune system and immunocompetence of crustacean isopods}. \textbf{Frédéric Chevalier}\footnotemark[1], Mathieu Sicard, Joanne Bertaux, Juline Herbinière, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier. Pacific Grove, California, USA, June 9$^{th}$ to 14$^{th}$ 2010.
580
-
581 581
 \end{outerlist}
582 582
 
583 583
 \blankline
... ...
@@ -602,8 +602,6 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
602 602
 
603 603
 	\item \href{https://www.eseb2013.com/}{XIV Congress of the European Society for Evolutionary Biology}: \textit{Accurate exome sequencing in a microscopic invertebrate}. \textbf{Frédéric D. Chevalier}\footnotemark[1], Philip T. LoVerde \& Timothy JC. Anderson. Lisbon, Portugal, August 19$^{th}$ to 24$^{th}$ 2013.
604 604
 
605
-	\item \href{http://www.cnrs.fr/insb/cjm/archives/2011/docs/Sorci_Milinski_2011_web.pdf}{Jacques Monod Conferences}: \textit{\emph{Wolbachia} symbiosis and \emph{Armadilidium vulgare} immunity: interactions and impacts}. \textbf{Frédéric Chevalier}, Joanne Bertaux, Mathieu Sicard, Juline Herbinière, Didier Bouchon, Pierre Grève \& Christine Braquart-Varnier\footnotemark[1]. Roscoff, France, September 3$^{rd}$ to 7$^{th}$ 2011.
606
-
607 605
 \end{outerlist}
608 606
 
609 607
 
... ...
@@ -664,9 +662,10 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
664 662
 \begin{outerlist}
665 663
 	\item Nucleic and protein sequence similarity search: \href{http://blast.ncbi.nlm.nih.gov/Blast.cgi}{\textsc{Blast}} (local or online blast)
666 664
 	\item Protein domain similarity search: \href{http://crisceb.unina2.it/angelo/PROTEIN_TOOLS/PROSCAN/}{ProScan}, \href{http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi}{Conserved Domain Search}
665
+	\item \emph{In silico} evaluation of protein stability: \href{https://www.rosettacommons.org/}{Rosetta}
667 666
 	\item Nucleic and protein sequence alignment: \href{http://www.mbio.ncsu.edu/BioEdit/bioedit.html}{\textsc{Bioedit}}, \href{http://www.clustal.org/}{Clustal}, \href{http://guidance.tau.ac.il/overview.html}{Guidance},  \href{http://bioinfo.genotoul.fr/multalin/multalin.html}{\textsc{Multalin}}, \href{http://mafft.cbrc.jp/alignment/software/}{\textsc{Mafft}}, \href{http://www.ebi.ac.uk/goldman-srv/prank/prank/}{\textsc{Prank}}, \href{http://smart.embl-heidelberg.de/}{\textsc{Smart}}
668 667
 	\item Survival rate analysis: \href{http://en.wikipedia.org/wiki/Logrank_test}{LogRank test} and \href{http://en.wikipedia.org/wiki/Proportional_hazards_models}{Cox Models}
669
-	\item New-generation sequencing data analysis: \href{http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page}{\textsc{Mira}} (sequence assembly), \href{http://www.phrap.org/phredphrapconsed.html}{Phred / Phrap / Consed} (sequence assembly), \href{http://samtools.sourceforge.net/}{SAMtools} (sequence alignment), \href{http://www.sanger.ac.uk/resources/software/artemis/}{Artemis} (genome annotation), \href{http://bio-bwa.sourceforge.net/}{BWA} (sequence alignment),  \href{http://cufflinks.cbcb.umd.edu/}{Cufflinks} (RNA-Seq data analysis)
668
+	\item New-generation sequencing data analysis: sequence assembly (\href{http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page}{\textsc{Mira}}, \href{http://www.phrap.org/phredphrapconsed.html}{Phred / Phrap / Consed}), sequence alignment (\href{http://samtools.sourceforge.net/}{SAMtools}, \href{http://bio-bwa.sourceforge.net/}{BWA}, \href{https://github.com/alexdobin/STAR}{STAR}), genome annotation and visualization (\href{http://www.sanger.ac.uk/resources/software/artemis/}{Artemis}, \href{https://software.broadinstitute.org/software/igv/}{IGV}), genome coordinate manipulation (\href{http://bedtools.readthedocs.io/en/latest/}{BEDTools}), gene expression quantification (\href{http://cufflinks.cbcb.umd.edu/}{Cufflinks}, \href{https://deweylab.github.io/RSEM/}{RSEM}, \href{http://www-huber.embl.de/users/anders/DESeq/}{DESeq})
670 669
 \end{outerlist}
671 670
 
672 671
 
... ...
@@ -679,9 +678,10 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
679 678
 %
680 679
 \textit{Informatic skills}
681 680
 \begin{outerlist}
682
-	\item Statistic softwares: \href{http://www.r-project.org/}{R program}, \textsc{Jmp}
683
-	\item Programming: \href{http://en.wikipedia.org/wiki/Unix_shell}{UNIX shell} scripting, R scripting, \href{http://www.perl.org/docs.html}{Perl} scripting
684
-	\item Applications: Microsoft Office, \href{http://why.openoffice.org/}{OpenOffice.org}, \href{http://www.libreoffice.org/}{LibreOffice} for GNU/Linux or Windows platforms, \href{http://en.wikipedia.org/wiki/LaTeX}{\LaTeX{}}, \href{http://en.wikipedia.org/wiki/BibTeX}{B\textsc{ib}\TeX{}}, \href{http://jabref.sourceforge.net/}{JabRef}
681
+	\item Statistics softwares: \href{http://www.r-project.org/}{R program}, \textsc{Jmp}
682
+	\item Programming: \href{http://en.wikipedia.org/wiki/Unix_shell}{UNIX shell} scripting (expert level), \href{https://www.r-project.org/}{R} scripting (expert level), \href{http://www.perl.org/docs.html}{Perl} scripting (beginner level), \href{https://www.python.org/}{Python} (beginner level)
683
+	\item Networking: SSH client and server setup, website setup through Apache (WordPress, Piwigo, Ampache, Nextcloud, etc.)
684
+	\item Office applications: Microsoft Office, \href{http://why.openoffice.org/}{OpenOffice.org}, \href{http://www.libreoffice.org/}{LibreOffice} for GNU/Linux or Windows platforms, \href{http://en.wikipedia.org/wiki/LaTeX}{\LaTeX{}}, \href{http://en.wikipedia.org/wiki/BibTeX}{B\textsc{ib}\TeX{}}, \href{http://jabref.sourceforge.net/}{JabRef}
685 685
 	\item Image processing: \href{http://rsbweb.nih.gov/ij/}{ImageJ}, \href{http://www.gimp.org/}{GIMP}, \href{http://inkscape.org/?lang=en}{Inkscape}
686 686
 	\item Operating systems: GNU/Linux (Ubuntu, Mandriva, Debian distributions), Microsoft Windows (2000/XP/Vista/7)
687 687
 \end{outerlist}
... ...
@@ -703,6 +703,14 @@ Symbiosis, Host-symbiont interaction, Genetics, Population genomics, Drug resist
703 703
 %
704 704
 \textbf{Administrative responsabilities}
705 705
 \begin{outerlist}
706
+\item[] \textit{Committee Outreach Member}	\hfill \textbf{March 2018 to now}
707
+	\begin{innerlist}
708
+	\item Involved in scientific activity design
709
+	\end{innerlist}
710
+\item[] \textit{Texas Biomed Strategic planning}	\hfill \textbf{October 2017 to July 2018}
711
+	\begin{innerlist}
712
+	\item Co-lead of the Training and Career Development Action Team
713
+	\end{innerlist}
706 714
 \item[] \textit{\href{http://ed-icbg.univ-poitiers.fr/}{ICBG graduate school}}	\hfill \textbf{October 2007 to June 2009}
707 715
 	\begin{innerlist}
708 716
 	\item PhD student delegate