#!/usr/bin/env Rscript # Title: # Version: # Author: Frédéric CHEVALIER # Created in: 2014-0 # Modified in: #==========# # Comments # #==========# #===================# # Packages required # #===================# # library(getopt) #===========# # Functions # #===========# #-------------------------# # Function to save tables # #-------------------------# save.mytable <- function (x, filename, ext=".tsv", sep="\t", col.names=FALSE, row.names=FALSE, append=FALSE){ # Folder creation for table output (if does not exist) if (file.exists("Results/") == FALSE) {dir.create("Results")} # Data export write.table(x, file=paste("Results/",filename, ext, sep=""), col.names=col.names, row.names=row.names, append=append, sep=sep) } #===========# # Variables # #===========# # Data file myfile <- "" mydata <- read.csv(myfile, header=TRUE, sep=";") # Object contaning the input file name filename <- strsplit(myfile,".csv") #=================# # Data processing # #=================# #========# # Curves # #========# #=========# # Figures # #=========# # Create the graph folder if it do not already exist if (file.exists("Graphs/") == FALSE) {dir.create("Graphs")} pdf(file=paste("Graphs/", name, ".pdf", sep="") # Draw graph here dev.off()