@@ -1,8 +1,8 @@

 #!/bin/bash

 # Title:

 # Version: 

-# Author: Frédéric CHEVALIER <fcheval@txbiomedgenetics.org>

-# Created in: 2014-1

+# Author: Frédéric CHEVALIER <fcheval@txbiomed.org>

+# Created in: 2015-

 # Modified in:

 # Licence : GPL v3

@@ -12,7 +12,7 @@

 # Aims #

 #======#

-# 

+aim=""

@@ -20,7 +20,7 @@

 # Versions #

 #==========#

-# v0.0 - 2014-1: creation

+# v0.0 - 2015-xx-xx: creation

@@ -28,21 +28,13 @@

 # Functions #

 #===========#

-# Dependency test

-function test_dep {

-    which $1 &> /dev/null

-    if [[ $? != 0 ]]

-    then

-        error "Package $1 is needed. Exiting..." 1

-    fi

-}

-

-

 # Usage message

 function usage {

     echo -e "

     \e[32m ${0##*/} \e[00m -i|--in file -o|--out value -v|--val value -s|--switch -h|--help

+Aim: $aim

+

 Options:

     -i, --in        input file

     -o, --out       name of output file

@@ -76,32 +68,47 @@ function warning {

 # Error message

+## usage: error "message" exit_code

+## exit code optional (no exit allowing downstream steps)

 function error {

     if [[ -t 1 ]]

     then

         echo -e "\e[31mError:\e[00m $1"

-        exit $2

     else

         echo -e "Error: $1"

+    fi

+

+    if [[ -n $2 ]]

+    then

         exit $2

     fi

 }

+# Dependency test

+function test_dep {

+    which $1 &> /dev/null

+    if [[ $? != 0 ]]

+    then

+        error "Package $1 is needed. Exiting..." 1

+    fi

+}

+

+

 #==============#

 # Dependencies #

 #==============#

-# 

+test_dep

-#==========================#

-# Declaration of variables #

-#==========================#

+#===========#

+# Variables #

+#===========#

-# Load variables

+# Options

 while [[ $# -gt 0 ]]

 do

     case $1 in

@@ -137,4 +144,9 @@ fi

 # Processing #

 #============#

+#-------------#

+# Sub-section #

+#-------------#

+

+

 exit 0