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#!/bin/bash |
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# Title: |
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-# Version: |
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-# Author: Frédéric CHEVALIER <f15.chevalier@gmail.com> |
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-# Created in: |
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+# Version: |
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+# Author: Frédéric CHEVALIER <fcheval@txbiomedgenetics.org> |
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+# Created in: 2014-0 |
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# Modified in: |
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-# License : GPL v3 |
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+# Licence : GPL v3 |
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@@ -12,7 +12,7 @@ |
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# Aims # |
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#======# |
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-# |
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+# |
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# Versions # |
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#==========# |
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-# |
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+# v0.0: creation |
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# Dependencies # |
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#==============# |
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-# |
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+# |
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+ |
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+ |
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+ |
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+#===========# |
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+# Functions # |
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+#===========# |
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+ |
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+# Usage message |
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+function usage {
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+ echo -e " |
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+ \e[32m ${0##*/} \e[00m -i|--in file -o|--out value -v|--val value -s|--switch -h|--help
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+ |
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+Options: |
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+ -i, --in input file |
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+ -o, --out name of output file |
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+ -v, --val value |
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+ -s, --switch switch |
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+ -h, --help this message |
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+" |
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+} |
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+ |
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+ |
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+ |
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+# Error message |
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+function error {
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+ echo -e "\e[31mError:\e[00m $1" |
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+ exit $2 |
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+} |
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+ |
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+ |
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+# Warning message |
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+function warning {
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+ echo -e "\e[33mWarning:\e[00m $1" |
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+} |
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+ |
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@@ -36,7 +71,37 @@ |
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# Declaration of variables # |
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#==========================# |
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- |
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+# Load variables |
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+while [[ $# -gt 0 ]] |
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+do |
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+ case $1 in |
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+ -i|--in ) input="$2" ; shift 2 |
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+ while [[ ! -z "$1" && $(echo "$1"\ | grep -qv "^-" ; echo $?) == 0 ]] |
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+ do |
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+ input=$(echo "$input" "$1") |
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+ shift |
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+ done ;; |
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+ -o|--out ) output="$2" ; shift 2 ;; |
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+ -v|--val ) v="$2" ; shift 2 ;; |
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+ -s|--switch ) switch=1 ; shift ;; |
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+ -h|--help ) usage ; exit 0 ;; |
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+ * ) echo "Invalid option: $1" |
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+ usage |
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+ exit 1 ;; |
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+ esac |
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+done |
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+ |
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+ |
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+# Check the existence of obligatory options |
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+if [[ -z "$input" ]] |
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+then |
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+ error "The option input is required. Exiting..." 1 |
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+fi |
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+ |
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+if [[ -z "$output" ]] |
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+then |
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+ output= |
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+fi |
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@@ -44,5 +109,4 @@ |
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# Processing # |
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#============# |
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- |
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exit 0 |