@@ -1,14 +1,15 @@

 # Title: .bash_profile

 # Author: Frédéric CHEVALIER <f15.chevalier@gmail.com>

-# Version: 1.6

+# Version: 1.7

 # Created in: 2012-05-25

-# Modified in: 2014-10-15

+# Modified in: 2014-10-22

 #==========#

 # Versions #

 #==========#

+# v1.7 - 2014-10-22: alias added / conditional modification of PATH and Ld_LIBRARY_PATH to be able to use eog and evince on other server (crow, ...)

 # v1.6 - 2014-10-15: alias added / LC* added / LS_COLORS removed / PATH updated / LD_LIBRARY_PATH updated

 # v1.5 - 2014-09-30: improve screen session detection to print welcome message at server connection even if screen session is running elsewhere

 # v1.4 - 2014-08-14: adapt behavior of the start screen regarding the screen program

@@ -45,6 +46,9 @@ alias medusa='ssh -Y medusa'

 alias medusa2='ssh -Y medusa2'

 alias mendel='ssh -Y mendel'

 alias crow='ssh -Y crow'

+alias bulmer='ssh -Y bulmer'

+alias bauhaus='ssh -Y bauhaus'

+alias u2='ssh -Y u2'

 alias model_script_sh='cp $HOME/Templates/script.sh $1'

@@ -54,7 +58,11 @@ alias model_script_sh='cp $HOME/Templates/script.sh $1'

 # User specific environment and startup programs #

 #================================================#

-# Locale variables (get with locale command)

+#--------#

+# Locale #

+#--------#

+

+# Get with locale command

 export LANG=en_US.UTF-8

 export LC_CTYPE=en_US.UTF-8

 export LC_TIME=en_US.UTF-8      # Fix timestamp to english format (french connection problem)

@@ -62,13 +70,13 @@ export LC_NUMERIC=en_US.UTF-8   # To always have . as decimal separator

 export LC_NAME=en_US.UTF-8

 LC_ALL=

-# Path variable

-export PATH=$HOME/local/bin:$HOME/local/share:$HOME/local/usr/local/bin     # Personal path

-export PATH=$PATH:/opt/openmpi/bin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/hmmer/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/rocks/bin:/opt/rocks/sbin:/opt/condor/bin:/opt/condor/sbin:/opt/gridengine/bin/lx26-amd64:/usr/bin:/usr/local/bin:/bin:/usr/java/latest/bin # System path

-export PATH=$PATH:/opt/gridengine/bin/linux-x64 # System path needed for the new medusa

-# Location of bamtools lib (source: http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/install/bamtools.htm)

-export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$HOME/local/lib" #:$HOME/local/lib64" #Otherwise pb with heron  #:$LD_LIBRARY_PATH"

+#-------#

+# Paths #

+#-------#

+

+# Path variable

+export PATH=:$HOME/local/bin:$HOME/local/share:$HOME/local/usr/local/bin:$PATH     # Personal path

 # Perl variables

 export PERL5LIB=~/local/lib/perl5/site_perl/5.18.2/x86_64-linux/auto:~/local/lib/perl5/5.18.2:~/local/lib/perl5/site_perl:~/local/lib/perl5/site_perl/5.18.2:~/local/lib/perl5/site_perl/5.18.2/x86_64-linux:~/local/lib/perl5/5.18.2/x86_64-linux:/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi:/usr/lib/perl5/site_perl/5.8.8:/usr/lib/perl5/site_perl:/usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi:/usr/lib/perl5/vendor_perl/5.8.8:/usr/lib/perl5/vendor_perl:/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi:/usr/lib/perl5/5.8.8

@@ -76,6 +84,23 @@ export PERL5LIB=~/local/lib/perl5/site_perl/5.18.2/x86_64-linux/auto:~/local/lib

 # Python

 export PYTHONPATH=$HOME/local/lib/python2.6/site-packages

+# Special paths for medusa and nodes

+if [[ $HOSTNAME =~ medusa* || $HOSTNAME =~ compute.* ]]

+then

+    # Path variable

+    export PATH=$HOME/local/bin:$HOME/local/share:$HOME/local/usr/local/bin     # Personal path

+    export PATH=$PATH:/opt/openmpi/bin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/hmmer/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/rocks/bin:/opt/rocks/sbin:/opt/condor/bin:/opt/condor/sbin:/opt/gridengine/bin/lx26-amd64:/usr/bin:/usr/local/bin:/bin:/usr/java/latest/bin # System path

+    export PATH=$PATH:/opt/gridengine/bin/linux-x64 # System path needed for the new medusa

+

+    # Location of bamtools lib (source: http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/install/bamtools.htm)

+    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$HOME/local/lib" #:$HOME/local/lib64" #Otherwise pb with heron  #:$LD_LIBRARY_PATH"

+fi

+

+

+#----------#

+# Programs #

+#----------#

+

 # Vim

 export VIMHOME=$HOME/.vim

@@ -90,7 +115,6 @@ fi

 export R_LIBS="${R_LIBS_HOME}/${R_version}"

-

 # SSH environment setup

 if [[ ! $HOSTNAME =~ compute.* ]]

 then